Tabular learning × biomedicine

A benchmark for high-dimensional biomedical tables.

TabBench-Bio compares classical models, neural networks, and tabular foundation models across transcriptomic, metagenomic, molecular, sequence-derived, and genomic-prediction datasets on a controlled feature-by-sample grid.

46biomedical datasets
29model configurations
6,440evaluation points per model
5×cross-validation

Interactive results

Model rankings depend on the operating point.

Primary analysis: each score comes from the requested feature- and sample-cap cell; no smaller cell is substituted. Tuned failures use the untuned parent; other failures use the constant predictor.

Leaderboard

Bradley–Terry Elo

Random Forest is anchored at 1,000. Error bars are target-bootstrap 95% intervals.

Budget response

Performance across sample budgets

Budget response

Performance across feature budgets

Efficiency

Performance vs. prediction cost

Efficiency

Performance vs. fitting cost

Stability

Rank stability map

Coverage

Datasets by modality