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Datasets

Browse classification and regression datasets spanning gene expression, DNA methylation, metagenomics, molecular properties, genomic prediction, and sequence-derived embeddings. Each dataset page identifies the prediction target and data source, and compares model scores and learning curves across feature counts and training-sample budgets.

46 of 46 datasets
Dataset Modality Target Task Source Dataset details
Acute Toxicity LD50 (Zhu)TDC-LD50-ZhuMolecular propertiesYRegressiontdc ↗Explore →
Ames MutagenicityTDC-AMESMolecular propertiesYClassificationtdc ↗Explore →
AP_Colon_KidneyOpenML-1137Gene expressionTissueClassificationopenml ↗Explore →
AP_Ovary_LungOpenML-1140Gene expressionTissueClassificationopenml ↗Explore →
Aqueous Solubility (AqSolDB)TDC-AqSolDBMolecular propertiesYRegressiontdc ↗Explore →
ARCENE Serum CancerOpenML-1458OtherClassClassificationopenml ↗Explore →
Blood DNA Methylation Age (GSE40279)GEO-GSE40279-Methylation-AgeDNA methylationage (y)Regressiongeo_matrix ↗Explore →
Blood-Brain Barrier Penetration (Martins)TDC-BBB-MartinsMolecular propertiesYClassificationtdc ↗Explore →
BRCA VEP (Evo2)local-BRCA_Evo2-VEPGLM/PLM EmbeddingsyClassificationlocal ↗Explore →
Breast Cancer Subtypes (GSE10893)GEO-GSE10893Gene expressionsubtypeClassificationgeo ↗Explore →
BurkittLymphomaOpenML-1084Gene expressionDecisionClassificationopenml ↗Explore →
CYP3A4 Inhibition (Veith)TDC-CYP3A4-VeithMolecular propertiesYClassificationtdc ↗Explore →
DeepLoc2 Fungi (ESM-2)local-DeepLoc2-Fungi-ESM2GLM/PLM EmbeddingsmembraneClassificationlocal ↗Explore →
EMG produced TPA metagenomics assembly of PRJNA728374 data set (Gut microbiome responses to dietary intervention with hypocholesterolemic vegetable oils.).MGYS00006282Metagenomicshost sexClassificationmgnify ↗Explore →
EMG produced TPA metagenomics assembly of the A metagenome-wide association study of gut microbiota in type 2 diabetes. (gut metagenome) data set.MGYS00005285Metagenomicshost sexClassificationmgnify ↗Explore →
EMG produced TPA metagenomics assembly of the Metagenomic sequencing of preterm infant gut microbiota raw sequence reads () data set.MGYS00002425Metagenomicshost sexClassificationmgnify ↗Explore →
EMG produced TPA metagenomics assembly of the PRJNA275349 data set (Human Microbiome Environment Metagenome).MGYS00005380Metagenomicsisolation sourceClassificationmgnify ↗Explore →
EMG produced TPA metagenomics assembly of the PRJNA300541 data set (Antibiotic resistance exchange between microbiota in resource-poor settings in Latin America).MGYS00005381Metagenomicsenvironment (biome)Classificationmgnify ↗Explore →
EMG produced TPA metagenomics assembly of the PRJNA46333 data set (Gene-Environment Interactions at the Skin Surface).MGYS00005379Metagenomicsenvironment (material)Classificationmgnify ↗Explore →
Estrogen Receptor BioactivityCHEMBL206Molecular propertiespchembl_valueRegressionchembl ↗Explore →
GCMOpenML-1106Gene expressionclassClassificationopenml ↗Explore →
Gene Fusion Breakpoints (NT-v2)FusionAI-NTv2-GeneFusionGLM/PLM EmbeddingsfusionClassificationfusionai ↗Explore →
Glucocorticoid Receptor BioactivityCHEMBL2034Molecular propertiespchembl_valueRegressionchembl ↗Explore →
Gut microbiome markers (healthy vs cirrhosis)gut-cirrhosisMetagenomicsdiseaseClassificationmetagenomics ↗Explore →
Human feces metagenome 16s rDNA sequencingMGYS00001255Metagenomicshost sexClassificationmgnify ↗Explore →
Human Microbiome Environment MetagenomeMGYS00001056Metagenomicsisolation sourceClassificationmgnify ↗Explore →
Human skin bacterial metagenome and Virome MetagenomeMGYS00005384Metagenomicshost sexClassificationmgnify ↗Explore →
Lipophilicity (AstraZeneca)TDC-Lipophilicity-AstraZenecaMolecular propertiesYRegressiontdc ↗Explore →
Maize Flowering Time Genomic Predictiongp-maize-FTGenomic predictionFTRegressiongp ↗Explore →
mouseTypeOpenML-1083Gene expressionDecisionClassificationopenml ↗Explore →
mtp2OpenML-430Otheroz1143Regressionopenml ↗Explore →
PRISM Stool Metabolomics CD vs UCMW-ST001000-CD-UCOtherdiagnosisClassificationmetabolomics ↗Explore →
Rheumatoid Arthritis DNA Methylation (GSE42861)GEO-GSE42861-Methylation-RADNA methylationdisease stateClassificationgeo_matrix ↗Explore →
Riboflavin ProductionOpenML-46983Gene expressionxRegressionopenml ↗Explore →
Rice Flowering Time Genomic Predictiongp-rice-FTGenomic predictionFTRegressiongp ↗Explore →
Schizophrenia DNA Methylation (GSE147221)GEO-GSE147221-Methylation-SchizophreniaDNA methylationstatusClassificationgeo_matrix ↗Explore →
Smoking Status DNA Methylation (GSE50660)GEO-GSE50660-Methylation-SmokingDNA methylationsmoking (0, 1 and 2, which represent never, former and current smokers)Classificationgeo_matrix ↗Explore →
Soybean Yield Genomic Predictiongp-soy-YLDGenomic predictionYLDRegressiongp ↗Explore →
Switchgrass Height Genomic Predictiongp-switchgrass-HTGenomic predictionHTRegressiongp ↗Explore →
TCGA Breast (BRCA, RNA-seq)TCGA-TCGA-BRCA_Gene-Expression-QuantificationGene expressionsample_typeClassificationtcga ↗Explore →
TCGA Head & Neck (HNSC, RNA-seq)TCGA-TCGA-HNSC_Gene-Expression-QuantificationGene expressionsample_typeClassificationtcga ↗Explore →
TEM-1 Activity (ESM-2)local-PEER-BetaLactamase-ESM2GLM/PLM EmbeddingsactivityRegressionlocal ↗Explore →
Tox21 Aryl Hydrocarbon Receptor ActivityMoleculeNet-Tox21-NR-AhRMolecular propertiesNR-AhRClassificationmoleculenet ↗Explore →
Tox21 Mitochondrial Membrane PotentialMoleculeNet-Tox21-SR-MMPMolecular propertiesSR-MMPClassificationmoleculenet ↗Explore →
Uterus vs. Other TissueOpenML-1138Gene expressionTissueClassificationopenml ↗Explore →
variousCancers_finalOpenML-1088Gene expressionDecisionClassificationopenml ↗Explore →